| Christophsis Arc | Cat and Mouse (216), The Hidden Enemy (116), (Movie) |
| Toydaria Arc | Supply Lines (303), Ambush (101) |
| Domino Squad Arc | Clone Cadets (301), Rookies (105), ARC Troopers (302) |
| Malevolence Arc | Rising Malevolence (102), Shadow of Malevolence (103), Destroy Malevolence (104) |
| R2 Lost Arc | Downfall of a Droid (106), Duel of the Droids (107) |
| Nute Gunray Arc | Bombad Jedi (108), Cloak of Darkness (109), Lair of Grievous (110) |
| Pirate Arc | Dooku Captured (111), The Gungan General (112) |
| Lurmen Arc | Jedi Crash (113), Defenders of Peace (114) |
| Orto Plutonia Arc | Trespass (115), Sphere of Influence (304) |
| Virus Arc | Blue Shadow Virus (117), Mystery of a Thousand Moons (118) |
| Ryloth Arc | Storm over Ryloth (119), Innocents of Ryloth (120), Liberty on Ryloth (121) |
| Holocron Arc | Holocron Heist (201), Cargo of Doom (202), Children of the Force (203) |
| The Zillo Beast Arc | Bounty Hunters (217), The Zillo Beast (218), The Zillo Beast Strikes Back (219) |
| Geonosis Arc | Senate Spy (204), Landing at Point Rain (205), Weapons Factory (206), Legacy of Terror (207), Brain Invaders (208) |
| Deserter Arc | Grievous Intrigue (209), The Deserter (210), Lightsaber Lost (211) |
| Death Watch Arc | The Mandalore Plot (212), Voyage of Temptation (213), Duchess of Mandalore (214) |
| Boba Fett Arc | Death Trap (220), R2 Come Home (221), Lethal Trackdown (222) |
| Corruption Arc | Corruption (305), The Academy (306), Assassin (307) |
| Ziro the Hutt Arc | Evil Plans (308), Hostage Crisis (122), Hunt for Ziro (309) |
| Heroes on Both Sides Arc | Heroes on Both Sides (310), Pursuit of Peace (311), Senate Murders (215) |
| Nightsisters Arc | Nightsisters (312), Monster (313), Witches of the Mist (314) |
| Mortis Gods Arc | Overlords (315), Altar of Mortis (316), Ghosts of Mortis (317) |
| The Citadel Arc | The Citadel (318), Counter Attack (319), Citadel Rescue (320) |
| Trandoshan Arc | Padawan Lost (321), Wookie Hunt (322) |
| Water Arc | Water War (401), Gungan Attack (402), Prisoner(403), Shadow Warrior (404) |
| Droids Arc | Mercy Mission (405), Nomad Droids (406) |
| Umbara Arc | Darkness on Umbara (407), The General (408), Plan of Dissent (409), Carnage of Krell (410) |
| Zygerria Arc | Kidnapped (411), Slaves of the Republic (412), Escape from Kadavo (413), A Friend in Need (414) |
| Obi-Wan Undercover Arc | Deception (415), Friends and Enemies (416), The Box (417), Crisis on Naboo (418) |
| Ventress Arc | Massacre (419), Bounty (420) |
| Maul Return Arc | Brothers (421), Revenge (422) |
| Onderon Arc | A War on Two Fronts (502), Front Runners (503), The Soft War (504), Tipping Points (505) |
| Youngling Arc | The Gathering (506), A Test of Strength (507), Bound for Rescue (508), A Necessary Bond (509) |
| D-Squad Arc | Secret Weapons (510), A Sunny Day in the Void (511), Missing in Action (512), Point of No Return (513) |
| Maul Rules Mandalore Arc | Revival (501), Eminence (514), Shades of Reason (515), The Lawless (516) |
| Ahsoka on the Run Arc | Sabotage (517), The Jedi Who Knew Too Much (518), To Catch a Jedi (519), The Wrong Jedi (520) |
| Order 66 Arc | The Unknown (601), Conspiracy (602), Fugitive (603), Orders (604) |
| Clovis Arc | An Old Friend (605), The Rise of Clovis (606), Crisis at the Heart (607) |
| Disappeared Arc | The Disappeared Part 1 (608), The Disappeared Part 2 (609) |
| Force Ghost Arc | The Lost One (610), Voices (611), Destiny (612), Sacrifice (613) |
| The Bad Batch Arc | The Bad Batch (701), A Distant Echo (702), On the Wings of Keerdaks (703), Unfinished Business (704) |
| Martez Sisters Arc | Gone with a Trace (705), Deal No Deal (706), Dangerous Debt (707), Together Again (708) |
| Siege of Mandalore Arc | Old Friends Not Forgotten (709), The Phantom Apprentice (710), Shattered (711), Victory and Death (712) |
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